Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30727651_30728396_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

30727651 - 30728396

Intron Length:

746

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTCTGTGTG

5'SS Class:

major

3'SS Sequence:

ATGTGTTGCTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTCAT

U12 Branch Point Sequence:

TTTCTGTTCATG

Flanking Amino Acid:

HLEQDLLDHETPVVAIMTTG

Intron Amino Acid Position:

218

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.9

0.54

1.3

68.8

42.3

Major BPS

84.8

0.86

85.7

34.9

Major PPT

0.4

1.1

65.6

44.9

Minor 5ss

37.8

-1.4

3.1

49.2

47.1

Minor BPS

45.4

-0.5

2.4

59.73

42.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008168

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040768

30719764 - 30734154

14391

ENSAPLT00000020071

30723277 - 30734154

10878

ENSAPLT00000008471

30719788 - 30734154

14367