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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30729983_30730363_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30729983 - 30730363
Intron Length:
381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTATG
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TTCCTTTTCACA
Flanking Amino Acid:
KNNYSTLDFKEWVEFTPYEV
Intron Amino Acid Position:
376

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
83.7
34.8
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
86.7
0.83
0.7
82.7
25.9
Minor 5ss
39.4
-1.2
2.8
51.2
45.3
Minor BPS
54.8
0.14
1.7
67.58
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008168
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040768
30719764 - 30734154
14391
ENSAPLT00000020071
30723277 - 30734154
10878
ENSAPLT00000008471
30719788 - 30734154
14367