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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30731389_30732027_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30731389 - 30732027
Intron Length:
639

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTTAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TCTCACTGTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
TAAAATTTAACC
Flanking Amino Acid:
RWTQDKMDNIEEEPLLPLKP
Intron Amino Acid Position:
458

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
1.1
85.2
27
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
74.6
0.55
0.9
68.9
36.7
Minor 5ss
38.2
-1.3
2.8
50
46.3
Minor BPS
60
0.29
1.5
66.62
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008168
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008471
30719788 - 30734154
14367