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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30732220_30732722_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30732220 - 30732722
Intron Length:
503

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAGACA
5'SS Class:
major
3'SS Sequence:
TATTTCTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TTGCACTTACAA
Flanking Amino Acid:
LENKHFRRWKDTVLDTFPNQ
Intron Amino Acid Position:
522

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
70.8
34.5
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
86.7
0.82
0.7
85.6
28.6
Minor 5ss
26.5
-2.7
3
31.6
42.4
Minor BPS
48.7
-0.1
1.9
63.3
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008168
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008471
30719788 - 30734154
14367
ENSAPLT00000040768
30719764 - 30734154
14391
ENSAPLT00000020071
30723277 - 30734154
10878