About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30732890_30733265_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30732890 - 30733265
Intron Length:
376

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGATAA
5'SS Class:
strong_major
3'SS Sequence:
TTCATTGATCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TCTTCTTTAAGT
Flanking Amino Acid:
LNYSAGSQILALDQTCKYCS
Intron Amino Acid Position:
578

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
0.9
71.8
28.6
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
73.6
0.53
1
65.7
44.5
Minor 5ss
31.9
-2.1
3
35
42.5
Minor BPS
75.1
0.87
1.6
87.23
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008168
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008471
30719788 - 30734154
14367