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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30732890_30733277_F

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
30732890 - 30733277
Intron Length:
388

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGATAA
5'SS Class:
strong_major
3'SS Sequence:
GGCTCTGGACCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TGTTCATTGATC
Flanking Amino Acid:
LNYSAGSQILTCKYCSEQGI
Intron Amino Acid Position:
384

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
0.9
71.8
28.6
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
54.8
0.11
1.1
46.7
44.8
Minor 5ss
31.9
-2.1
3
35
42.5
Minor BPS
66.6
0.5
1.6
75.86
34.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008168
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020071
30723277 - 30734154
10878