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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30772982_30774421_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30772982 - 30774421
Intron Length:
1440

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAAGAG
5'SS Class:
major
3'SS Sequence:
TTCTTCAAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
TTCTTCAAAACA
Flanking Amino Acid:
LIIETMFHEKEDCHKLTDQQ
Intron Amino Acid Position:
365

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.1
59.5
39.7
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
71
0.47
1
67.4
36.9
Minor 5ss
28.1
-2.5
3.5
37.6
47.2
Minor BPS
54.7
0.14
2
71.45
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008465
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008787
30762312 - 30781476
19165