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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30776850_30777718_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30776850 - 30777718
Intron Length:
869

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGTAA
5'SS Class:
strong_major
3'SS Sequence:
CCTTCTTCTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
CTCCCCTCAAAA
Flanking Amino Acid:
YLESQFSTWKDCELDSRPNH
Intron Amino Acid Position:
522

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
73.6
33
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
80.3
0.68
0.7
73.1
31.8
Minor 5ss
42.1
-0.9
3.1
54.8
49.4
Minor BPS
53.1
0.09
1.7
62.51
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008465
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008787
30762312 - 30781476
19165