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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30792345_30795786_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30792345 - 30795786
Intron Length:
3442

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATCT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTGCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TTTTTTTTCCCC
Flanking Amino Acid:
LSRFGNAFLNRFLCSQLPNQ
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.3
27.8
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
79.1
0.65
0.8
72.9
32
Minor 5ss
35.1
-1.7
3.1
48.3
47.4
Minor BPS
44.1
-0.4
3.6
72.92
38.9

Associated Gene:

Gene:
EHD4
Ensembl Gene ID:
ENSAPLG00000008924
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009287
30785990 - 30809368
23379