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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30827444_30828403_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30827444 - 30828403
Intron Length:
960

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATCT
5'SS Class:
strong_major
3'SS Sequence:
TCTCCGTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACAAAT
U12 Branch Point Sequence:
AAATCTCTATTC
Flanking Amino Acid:
LAFNALIHAHRPDLIQYSSL
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
77.5
31.3
Major BPS
60.7
0.27
1
65.3
28.1
Major PPT
73.8
0.54
0.8
65
36.3
Minor 5ss
39.9
-1.1
3.2
57.4
46.8
Minor BPS
46.7
-0.2
1.8
55.56
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008343
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008702
30821936 - 30911937
90002