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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30828633_30831487_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30828633 - 30831487
Intron Length:
2855

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
GTTCTCATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TCTTATGTGACT
Flanking Amino Acid:
GQTIQKRLAKIVFLLKEIDD
Intron Amino Acid Position:
262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
80.4
0.68
0.9
73.4
35.8
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
49.8
0.06
2.2
75.5
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008343
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008702
30821936 - 30911937
90002