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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30834829_30835296_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30834829 - 30835296
Intron Length:
468

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAGGACTC
5'SS Class:
major
3'SS Sequence:
TTCTTTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
TAATTCTGACTT
Flanking Amino Acid:
YQNLIALSKTRKSQLEEALK
Intron Amino Acid Position:
596

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
61.1
43.9
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
89
0.88
0.8
87.9
29.5
Minor 5ss
35.6
-1.6
3.5
51.7
45.1
Minor BPS
52.7
0.16
1.7
70.52
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008343
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008702
30821936 - 30911937
90002