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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30837531_30838426_F

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
30837531 - 30838426
Intron Length:
896

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GCA|GCAAAGCAA
5'SS Class:
weak_major
3'SS Sequence:
ACAGATGGTTAAG|A
3'SS Class:
major_hybrid
U2 Branch Point Sequence:
ACTTGAT
U12 Branch Point Sequence:
TTTTCCTTAACA
Flanking Amino Acid:
RRLKEQADIATEAPSDLNQK
Intron Amino Acid Position:
777

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.2
0.05
1.4
47.3
41.2
Major BPS
75
0.62
1
65.3
41.5
Major PPT
47.7
-0.1
1.2
45.1
45
Minor 5ss
21.3
-3.3
4
34.3
42.7
Minor BPS
97.3
1.48
0.5
99.7
14.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008343
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008702
30821936 - 30911937
90002