About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30843869_30843908_F

Intron Information:

Intron Rank:
17
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
30843869 - 30843908
Intron Length:
40

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAATAGCA
5'SS Class:
major
3'SS Sequence:
AATACATGGAGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATACAT
U12 Branch Point Sequence:
TGTCCTACAATA
Flanking Amino Acid:
AWAQSNPRTTQLAQENKELE
Intron Amino Acid Position:
1084

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.9
0.26
1.1
55.7
35.6
Major BPS
66.1
0.4
1
73
31.5
Major PPT
42.6
-0.4
1.7
39.3
43
Minor 5ss
33
-1.9
3.4
45.4
43.3
Minor BPS
48.5
-0.1
1.8
63.09
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008343
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008702
30821936 - 30911937
90002