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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30852493_30853211_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30852493 - 30853211
Intron Length:
719

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTCAA
5'SS Class:
major
3'SS Sequence:
CTTCTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TTGATCTCATTC
Flanking Amino Acid:
GTLKLLKKNKALQHEIAVYQ
Intron Amino Acid Position:
1557

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
68.7
37.6
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
86
0.81
0.7
80.8
24.4
Minor 5ss
39.7
-1.2
2.8
49.9
46.3
Minor BPS
47.4
-0.2
1.8
58.68
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008343
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008702
30821936 - 30911937
90002