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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30853376_30855016_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30853376 - 30855016
Intron Length:
1641

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGAACT
5'SS Class:
strong_major
3'SS Sequence:
GTTCCCTCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
GTTCCCTCAACA
Flanking Amino Acid:
LQELQELAAARGKKLDETLV
Intron Amino Acid Position:
1611

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
78.3
35.9
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
71.7
0.49
0.9
66.3
34.5
Minor 5ss
35
-1.7
3.2
50.3
45.7
Minor BPS
70.5
0.64
1.5
78.68
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008343
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008702
30821936 - 30911937
90002