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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30855150_30855967_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30855150 - 30855967
Intron Length:
818

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTCAAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAA
U12 Branch Point Sequence:
TTTTCCTTCAAA
Flanking Amino Acid:
DYGNDYEHVLQLCAKYNTFQ
Intron Amino Acid Position:
1656

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
85.7
25.5
Major BPS
73.4
0.58
0.9
75.3
29.7
Major PPT
69.4
0.44
1
72.2
31.5
Minor 5ss
40.8
-1
3
55
43.6
Minor BPS
71.3
0.66
1.8
84.76
35

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008343
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008702
30821936 - 30911937
90002