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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30860653_30864271_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30860653 - 30864271
Intron Length:
3619

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TCCTGGATTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
TTTTCCTGGATT
Flanking Amino Acid:
AHKLYQFQALVWDYFSWTAE
Intron Amino Acid Position:
1840

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
79.9
32.8
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
71.9
0.49
1
61.7
43.4
Minor 5ss
40.2
-1.1
2.8
54.6
37.1
Minor BPS
76.7
0.92
1.3
92.05
30.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008343
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008702
30821936 - 30911937
90002