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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30864476_30865665_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30864476 - 30865665
Intron Length:
1190

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTGAA
5'SS Class:
strong_major
3'SS Sequence:
AAATTGTTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
TTTCTTTGAAAA
Flanking Amino Acid:
LQDEEIGSKEIQQKLQSLLE
Intron Amino Acid Position:
1908

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
79.5
28.5
Major BPS
74.8
0.62
1
67
39.8
Major PPT
74.3
0.55
1
70.2
44.7
Minor 5ss
32.1
-2
3.1
40.5
45.7
Minor BPS
57.6
0.23
1.5
70.73
34.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008343
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008702
30821936 - 30911937
90002