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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30865816_30878123_F

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30865816 - 30878123
Intron Length:
12308

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTGAA
5'SS Class:
strong_major
3'SS Sequence:
ACGTTTTTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
AAAATATTAAAC
Flanking Amino Acid:
HLDKLLNSQEVYLKSSDFGS
Intron Amino Acid Position:
1958

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
79.4
28.9
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
77.8
0.63
0.9
72.7
37
Minor 5ss
38.1
-1.3
3.1
48.5
47.7
Minor BPS
47.6
-0.2
1.7
54.51
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008343
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008702
30821936 - 30911937
90002