Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30879412_30883716_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

30879412 - 30883716

Intron Length:

4305

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGAGGG

5'SS Class:

strong_major

3'SS Sequence:

CACGCTGCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTCAT

U12 Branch Point Sequence:

GTCATGCTAACT

Flanking Amino Acid:

LALFYQNLAEAENWISERMQ

Intron Amino Acid Position:

2048

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.3

0.9

69.9

41.1

Major BPS

84.8

0.86

1.1

85.7

34.9

Major PPT

65.3

0.34

57.4

38.3

Minor 5ss

29.8

-2.3

3.3

38.5

46.6

Minor BPS

-0.3

2.3

65.64

44.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008343

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008702

30821936 - 30911937

90002