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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30883873_30884456_F

Intron Information:

Intron Rank:
36
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
30883873 - 30884456
Intron Length:
584

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTCTC
5'SS Class:
strong_major
3'SS Sequence:
CTTGAATGTGAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TCATTTCTAACC
Flanking Amino Acid:
NEEIITAVNKKGEALVSKGH
Intron Amino Acid Position:
2100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1.1
76.2
39.9
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
57.3
0.17
1.2
56.7
42.5
Minor 5ss
44.3
-0.6
2.9
61.9
42.7
Minor BPS
58
0.23
1.7
67.11
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008343
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008702
30821936 - 30911937
90002