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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30884649_30885113_F

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30884649 - 30885113
Intron Length:
465

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGAA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTATCCTGAATG
Flanking Amino Acid:
NQVEAWIREKEVMINIGDVG
Intron Amino Acid Position:
2164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
80
27.6
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
85.2
0.79
0.7
84.2
23.7
Minor 5ss
31.4
-2.1
3.2
39.9
46.1
Minor BPS
71.4
0.53
1.5
73.5
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008343
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008702
30821936 - 30911937
90002