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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30885210_30887436_F

Intron Information:

Intron Rank:
38
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
30885210 - 30887436
Intron Length:
2227

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
CGCTTTGAAGGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
GAACACATACCT
Flanking Amino Acid:
LNEFRGATSGTTVDDAHIKD
Intron Amino Acid Position:
2196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1
75.5
40.6
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
46.2
-0.2
1.7
50.8
41.9
Minor 5ss
34.8
-1.7
3
41.4
44.7
Minor BPS
43.5
-0.4
2
59.13
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008343
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008702
30821936 - 30911937
90002