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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30901621_30904481_F

Intron Information:

Intron Rank:
44
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30901621 - 30904481
Intron Length:
2861

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACATCA
5'SS Class:
major
3'SS Sequence:
GTCATTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TTGTCTGTCATT
Flanking Amino Acid:
TVQSLQEKHQNLENEISSRD
Intron Amino Acid Position:
2576

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1.1
71.4
35.1
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
81.2
0.7
0.9
72.6
42.2
Minor 5ss
43.8
-0.7
2.9
57.7
46.5
Minor BPS
48.6
-0
2.4
74.76
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008343
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008702
30821936 - 30911937
90002