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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30905269_30905881_F

Intron Information:

Intron Rank:
46
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30905269 - 30905881
Intron Length:
613

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAATG
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
ACCTTCTGATTC
Flanking Amino Acid:
AGLINSNNPESPAILSKLQR
Intron Amino Acid Position:
2712

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1
75.5
40.6
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
92
0.94
0.7
88.3
28.9
Minor 5ss
35.7
-1.6
3.3
48
47.7
Minor BPS
47.2
-0.2
1.7
52.51
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008343
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008702
30821936 - 30911937
90002