Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30910894_30911799_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

30910894 - 30911799

Intron Length:

906

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTGAGTAAG

5'SS Class:

strong_major

3'SS Sequence:

TTTTTCCACTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CGTTAAT

U12 Branch Point Sequence:

TATCCGTTAATT

Flanking Amino Acid:

EGFLSDPSYGDSVSEVEELL

Intron Amino Acid Position:

3056

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.4

0.76

0.9

38.4

Major BPS

0.55

1.2

73.3

39.1

Major PPT

82.9

0.74

0.8

82.1

28.7

Minor 5ss

29.2

-2.4

2.5

25.1

36.7

Minor BPS

64.1

0.52

2.1

82.77

38.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008343

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008702

30821936 - 30911937

90002