About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30937011_30938028_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30937011 - 30938028
Intron Length:
1018

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
AACTCTTTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
CGTATGTCAACT
Flanking Amino Acid:
EEKYSTFKFREWTEFSPYEV
Intron Amino Acid Position:
570

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.6
100
0
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
75.2
0.57
0.8
69.8
35.6
Minor 5ss
41.7
-0.9
2.9
59.7
44.8
Minor BPS
45.8
-0.2
2.2
65.2
45.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009030
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009472
30929170 - 30963334
34165