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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30938147_30938741_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30938147 - 30938741
Intron Length:
595

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTATGTTAC
5'SS Class:
major
3'SS Sequence:
TCTGTTTGATTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTACTGTGATT
Flanking Amino Acid:
LVQEMFLHERPRKYKLTDQR
Intron Amino Acid Position:
531

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
71
35.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
69.2
0.43
1
70.3
40.1
Minor 5ss
46.1
-0.4
2.5
52.3
45
Minor BPS
54.4
0.22
2.1
79.19
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009030
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009472
30929170 - 30963334
34165