About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30940535_30941451_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30940535 - 30941451
Intron Length:
917

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGGGA
5'SS Class:
strong_major
3'SS Sequence:
ATTTATGTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TGCCTCTGGACT
Flanking Amino Acid:
PLQLYLQLNDCTEKLDVRLG
Intron Amino Acid Position:
365

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
65.8
40
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
80
0.67
1
73.7
40.9
Minor 5ss
28.7
-2.4
3.5
34.8
43.6
Minor BPS
54.5
0.22
1.5
69.88
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009030
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009472
30929170 - 30963334
34165