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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30941490_30942472_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30941490 - 30942472
Intron Length:
983

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TCTTTGTTTACA
Flanking Amino Acid:
KVKVTLPVRHNVPLQLYLQL
Intron Amino Acid Position:
353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
1
80.9
31.3
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
88.7
0.87
0.8
83.2
31.9
Minor 5ss
39.4
-1.2
2.7
51.9
37.5
Minor BPS
51.2
0.03
2.3
70.34
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009030
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009472
30929170 - 30963334
34165