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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30942584_30942701_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30942584 - 30942701
Intron Length:
118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTGA
5'SS Class:
major
3'SS Sequence:
TTGTTCTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATACAT
U12 Branch Point Sequence:
TGTGAGTAAAAT
Flanking Amino Acid:
WEPVLKARLQKVSDKEDDRN
Intron Amino Acid Position:
316

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
68.5
38.9
Major BPS
66.1
0.4
1
73
31.5
Major PPT
86.2
0.81
0.8
81.5
30.6
Minor 5ss
36.2
-1.6
3.2
47.7
47.7
Minor BPS
40.8
-0.6
2.5
62.73
46.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009030
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009472
30929170 - 30963334
34165