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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30943316_30944529_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30943316 - 30944529
Intron Length:
1214

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGGTTC
5'SS Class:
strong_major
3'SS Sequence:
CTGTCTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
CTGTCTTTTACA
Flanking Amino Acid:
EYVITNDVLVSREVWCLEVQ
Intron Amino Acid Position:
252

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
75.7
34.8
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
84.9
0.79
0.8
79.4
32.6
Minor 5ss
41.4
-1
3.3
55.7
43.3
Minor BPS
63.9
0.43
1.7
70.62
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009030
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009472
30929170 - 30963334
34165