About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30944573_30946329_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30944573 - 30946329
Intron Length:
1757

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TTTTTTTTGCTT
Flanking Amino Acid:
SLEVEFWMEKIPGPPEYVIT
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
81.4
26.2
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
82.7
0.73
0.7
81
31
Minor 5ss
32
-2.1
2.7
37.8
40.1
Minor BPS
46.8
-0.1
3.4
81.5
34.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009030
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009472
30929170 - 30963334
34165