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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30946389_30947560_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30946389 - 30947560
Intron Length:
1172

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGACT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
TGTATTTTACCC
Flanking Amino Acid:
VRETFALKSEKERCSKKWES
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.98
0.8
85.2
31.7
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
86.7
0.82
0.6
85.4
21.9
Minor 5ss
34.9
-1.7
3.2
49.5
46.5
Minor BPS
56.4
0.18
1.6
67.05
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009030
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009472
30929170 - 30963334
34165