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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30947693_30948405_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30947693 - 30948405
Intron Length:
713

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGTGAAA
5'SS Class:
major
3'SS Sequence:
CTTCTACTACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTCTTCTACT
Flanking Amino Acid:
FYFRIQREVENVLELAVCDE
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.5
1.1
67.7
39
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
74.5
0.55
0.9
67.2
38.2
Minor 5ss
30.3
-2.3
3.3
39.1
46.3
Minor BPS
66.3
0.59
1.9
88.46
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009030
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009472
30929170 - 30963334
34165