About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30950300_30957840_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30950300 - 30957840
Intron Length:
7541

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
ATGAAACTAACT
Flanking Amino Acid:
LRAMGSPPAKMKICPIYMLS
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
86.8
0.83
0.7
81.5
30.6
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
45.5
-0.2
2.1
66.79
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009030
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009472
30929170 - 30963334
34165