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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30990488_30992166_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30990488 - 30992166
Intron Length:
1679

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTCCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAGGAA
U12 Branch Point Sequence:
GCTTTAGGAATG
Flanking Amino Acid:
HVQQSHGCIAVNYWYDMEYD
Intron Amino Acid Position:
189

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
74.5
29.8
Major BPS
50.5
0.01
1.4
51.7
43.9
Major PPT
86.2
0.81
0.6
85
22.5
Minor 5ss
37.6
-1.4
3.2
49.9
46.6
Minor BPS
40.2
-0.8
2.2
45.38
41.3

Associated Gene:

Gene:
JMJD7
Ensembl Gene ID:
ENSAPLG00000031119
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018766
30990399 - 30996618
6220