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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30992327_30993378_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30992327 - 30993378
Intron Length:
1052

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAATG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATACAT
U12 Branch Point Sequence:
ATATACATACTC
Flanking Amino Acid:
EIVDEKTADKVPWIPLDPLN
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
77.9
36.7
Major BPS
74.9
0.62
1
81.3
29.9
Major PPT
87.2
0.84
0.8
84.6
30.3
Minor 5ss
36.4
-1.5
3.1
48.5
47.2
Minor BPS
46.3
-0.3
2
59.82
39

Associated Gene:

Gene:
JMJD7
Ensembl Gene ID:
ENSAPLG00000031119
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018766
30990399 - 30996618
6220