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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30993456_30994829_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30993456 - 30994829
Intron Length:
1374

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACATAAT
5'SS Class:
major
3'SS Sequence:
TCTGTGGTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGCCATTTAATT
Flanking Amino Acid:
PPSDRPFIPYELYQPATYHV
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
73.2
37.4
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
74.6
0.55
1
64.9
45.7
Minor 5ss
35.8
-1.6
3.1
47.5
43.4
Minor BPS
58.4
0.34
1.5
70.98
40.2

Associated Gene:

Gene:
JMJD7
Ensembl Gene ID:
ENSAPLG00000031119
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018766
30990399 - 30996618
6220