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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30994926_30995605_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30994926 - 30995605
Intron Length:
680

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAGGTATT
5'SS Class:
major
3'SS Sequence:
TTCTAAATCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTTTTCTAAATC
Flanking Amino Acid:
WLGESAAVTSLHKDHYENLY
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.1
76.5
38.6
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
69.8
0.45
0.9
67.3
37.7
Minor 5ss
42.8
-0.8
3.2
65.4
40.1
Minor BPS
71.7
0.66
1.6
81.43
33.4

Associated Gene:

Gene:
JMJD7
Ensembl Gene ID:
ENSAPLG00000031119
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018766
30990399 - 30996618
6220