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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30995663_30996443_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30995663 - 30996443
Intron Length:
781

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAACTTT
5'SS Class:
major
3'SS Sequence:
TCTAACCATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTGAA
U12 Branch Point Sequence:
ATCTCTCTAACC
Flanking Amino Acid:
PDIPWMSEALGKKPDAVNFW
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.1
72.5
39.7
Major BPS
72
0.55
1.1
63.4
44.3
Major PPT
70.9
0.47
1
66.8
39.2
Minor 5ss
49.6
-0
3
73.7
42.8
Minor BPS
64.6
0.44
1.7
73.29
37.7

Associated Gene:

Gene:
JMJD7
Ensembl Gene ID:
ENSAPLG00000031119
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018766
30990399 - 30996618
6220