About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31003350_31004334_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31003350 - 31004334
Intron Length:
985

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
GCCTCTTTATTT
Flanking Amino Acid:
MRKAIHLYRMVLNDTESSTD
Intron Amino Acid Position:
1536

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
73.6
30.3
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
90.5
0.91
0.7
88.8
26.9
Minor 5ss
27.7
-2.6
3
31.2
36.9
Minor BPS
57.2
0.31
1.6
67.71
44.1

Associated Gene:

Gene:
MAPKBP1
Ensembl Gene ID:
ENSAPLG00000009844
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041731
31003056 - 31093289
90234