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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31004421_31007680_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
31004421 - 31007680
Intron Length:
3260

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGACAC
5'SS Class:
major
3'SS Sequence:
TCCTCCCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TGTGCCTTAGTG
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
0.9
63.9
36.2
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
80.4
0.69
0.7
77.3
24.8
Minor 5ss
27
-2.6
2.9
30.6
36.6
Minor BPS
58.6
0.13
1.8
63.99
44.2

Associated Gene:

Gene:
MAPKBP1
Ensembl Gene ID:
ENSAPLG00000009844
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010270
31004335 - 31093289
88955