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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31004421_31007830_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31004421 - 31007830
Intron Length:
3410

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGCATG
5'SS Class:
major
3'SS Sequence:
TCCTCCCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TGTGCCTTAGTG
Flanking Amino Acid:
TSVTASAQVSESCISVEQCE
Intron Amino Acid Position:
1507

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
70.5
41.4
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
80.4
0.69
0.7
77.3
24.8
Minor 5ss
43.6
-0.7
2.8
56.4
48
Minor BPS
58.6
0.13
1.8
63.99
44.2

Associated Gene:

Gene:
MAPKBP1
Ensembl Gene ID:
ENSAPLG00000009844
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041731
31003056 - 31093289
90234