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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31014768_31015719_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31014768 - 31015719
Intron Length:
952

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGGTG
5'SS Class:
major
3'SS Sequence:
ATTTTTTAACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TATTTTTTAACC
Flanking Amino Acid:
QADLPVHIDKVGSSIAPQDN
Intron Amino Acid Position:
911

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.69
1
70.6
39.9
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
76.8
0.6
1
71.6
42.6
Minor 5ss
34.5
-1.8
3.7
46.7
43.3
Minor BPS
80.7
0.94
1
82.95
29.9

Associated Gene:

Gene:
MAPKBP1
Ensembl Gene ID:
ENSAPLG00000009844
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041731
31003056 - 31093289
90234
ENSAPLT00000010270
31004335 - 31093289
88955