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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31026680_31027246_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31026680 - 31027246
Intron Length:
567

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGCAT
5'SS Class:
major
3'SS Sequence:
TTATTTCACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TATTCTTTATTT
Flanking Amino Acid:
ECVATMYGHSEIVTGMKFSN
Intron Amino Acid Position:
702

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
69.6
42.7
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
77.7
0.62
0.9
73.4
36
Minor 5ss
31
-2.2
3.6
46.2
49.1
Minor BPS
71.2
0.74
1.5
84.84
36

Associated Gene:

Gene:
MAPKBP1
Ensembl Gene ID:
ENSAPLG00000009844
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010270
31004335 - 31093289
88955
ENSAPLT00000041731
31003056 - 31093289
90234