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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31029083_31030079_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31029083 - 31030079
Intron Length:
997

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
ATGTTCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
GTTCCCTGAATC
Flanking Amino Acid:
AAIGCQDRNIRVFNISSGKQ
Intron Amino Acid Position:
639

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
1
89
25.8
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
72.2
0.5
0.9
63.2
38.9
Minor 5ss
42.5
-0.8
2.8
59
45.4
Minor BPS
67.5
0.53
1.4
74.09
36

Associated Gene:

Gene:
MAPKBP1
Ensembl Gene ID:
ENSAPLG00000009844
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041731
31003056 - 31093289
90234
ENSAPLT00000010270
31004335 - 31093289
88955