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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31033067_31033177_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31033067 - 31033177
Intron Length:
111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATCTCA
5'SS Class:
major
3'SS Sequence:
TGTTATGTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAA
U12 Branch Point Sequence:
TTTTATTAAGCA
Flanking Amino Acid:
LASGDRIGTLRIYELQSLQE
Intron Amino Acid Position:
502

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
70.5
36.3
Major BPS
75.5
0.63
1
66.3
40.4
Major PPT
71.8
0.49
0.9
69.7
41.2
Minor 5ss
44.2
-0.6
2.8
57.5
46.7
Minor BPS
50.9
0.02
2
72.03
40.3

Associated Gene:

Gene:
MAPKBP1
Ensembl Gene ID:
ENSAPLG00000009844
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041731
31003056 - 31093289
90234
ENSAPLT00000010270
31004335 - 31093289
88955