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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_31039976_31041759_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31039976 - 31041759
Intron Length:
1784

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
ATTATGTTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
GCTATCTAAATG
Flanking Amino Acid:
DMIVNVWSWKKNIVVAANKV
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
21.5
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
79.3
0.66
1
69.8
45.2
Minor 5ss
42.8
-0.8
2.8
59.5
45
Minor BPS
48.8
-0.2
1.8
51.87
43.2

Associated Gene:

Gene:
MAPKBP1
Ensembl Gene ID:
ENSAPLG00000009844
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010270
31004335 - 31093289
88955
ENSAPLT00000041731
31003056 - 31093289
90234